Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2265791 chr13:114178996 T/C 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2265792 chr13:114179020 T/A 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2265793 chr13:114179699 A/G 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2265794 chr13:114180686 A/G 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2266951 chr22:21273441 G/A 2.07E-5 178 12.93 31.9 25.4 KM Plot
PCPG rs2270459 chr16:89979851 A/C 0.00014 178 3.17 20.2 25.92 KM Plot
PCPG rs2270460 chr16:89972416 C/A 0.000153 175 25.87 20.37 36.37 KM Plot
PCPG rs2275479 chr1:36921227 A/G 7.84E-5 177 25.28 26.62 10.3 KM Plot
PCPG rs2275480 chr1:36921533 A/G 8.27E-5 176 25.4 26.62 10.3 KM Plot
PCPG rs2276711 chr3:196054004 A/G 0 178 1.7 24.17 25.77 KM Plot
PCPG rs2278161 chr18:72176083 T/C 3.59E-6 176 24.7 28.83 10.3 KM Plot
PCPG rs2278162 chr18:72175814 A/G 3.19E-6 177 24.7 27.33 10.3 KM Plot
PCPG rs2278268 chr16:87336838 T/C 9.37E-5 176 24.1 30.63 3.17 KM Plot
PCPG rs2283564 chr16:89815656 T/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs2283565 chr16:89827556 G/T 0.000179 176 25.87 20.17 36.37 KM Plot